Friday, June 14, 2019

What is the difference between genetic engineering and genetic modification?

Genetic engineering implies that DNA was transferred from one organism to another through artificial means.  I'm using artificial here to mean anything that isn't strictly gamete combination - methods like artificial insemination and selective pollination are not considered genetic engineering.  This means that the target organisms don't need to have Any chance of successfully cross-breeding. 
 My favorite example is frogs and potatoes:






Though you could take DNA from, say, one cow, insert it into the genome of another cow, and produce a calf from the resultant DNA.  The calf would be considered genetically engineered, since their DNA was not entirely produced by the combination of an egg and sperm, even though their genome is still technically 100% bovine.

Genetic modification is a general term that refers to any type of human-driven modification, and is a close synonym to the word agriculture.  This is something we've been doing rigorously for thousands of years, and is the reason why corn is not a tiny seed head with more cellulose than sugar, why chickens are not little balls of feather and gristle, and why apples are not inedible tart.  
Genetic engineering is included as a form of genetic modification, in the same way that ballet is included as a form of dance.  Genetic engineering is a specialized form of genetic modification.
Genetic engineering is the process by which piece of DNA are transferred one organisms to another. This is also called Recombination DNA technology.
first recombinant DNA molecule Was made by Paul Berg in 1972 by combining DNA from monkey virus (SV40) with lambda virus. The new DNA can be targeted to a specific part of the genome.

A organism that is generated through genetic engineering or Recombination DNA technology  is considered to be genetically modified (G. M) and the resulting entity is a Genetically Modified Organisms
First Genetically modified organisms was a bacterium generated by Herbert Boyer and standly cohen in 1973.Rudolf jenisch created the first Genetically modified animal when he inserted foreign DNA into a Mouse in 1974.

Tuesday, June 11, 2019

What are the steps involved in genetic engineering?

Genetic engineering aims at synthesizing recombinant DNA which contains DNA from two different sources. Steps include:

  1. Acquire gene of interest
  2. Use molecular scissors to cut out the gene of interest. These are restriction endonucleases which cut gene at a site called palindromic sequences. 20 such enzymes are used extensively.     E.g. EcoR1.
  3. Molecular vector or carrier on which gene if interest could be placed. It can be bacterial plasmid or viruses
  4. The gene of interest along with the vector is then introduced into an expression system, as a result of a specific product is made.
  5. A small piece of circular DNA called a plasmid is extracted from the bacteria or yeast cell.
  6. A small section is then cut out of the circular plasmid by restriction enzymes, molecular scissors.
  7. The gene for human insulin is inserted into the gap in the plasmid. This plasmid is now genetically modified.
  8. The genetically modified plasmid is introduced into a new bacteria or yeast cell.
  9. This cell then divides rapidly and starts making insulin.
  10. To create large amounts of the cells, the genetically modified bacteria or yeast are grown in large fermentation vessels that contain all the nutrients they need. The more the cells divide, the more insulin is produced.
  11. When fermentation is complete, the mixture is filtered to release the insulin.
  12. The insulin is then purified and packaged into bottles and insulin pens for distribution to patients with diabetes.

Tuesday, June 4, 2019

Is a biotechnology major important?

IMPORTANCE OF BIOTECHNOLOGY :
Let's start mentioning that it is Biotechnology:- 
The word biotechnology is the result of the union of two others: biology and technology. And it is that biotechnology is exactly that: biological technology.If you stop to think about it, living beings can be considered biological machineries.
We use biological machinery in the form of molecules to move, get energy from what we eat, breathe, think But, what if we could use that machinery to solve problems of our daily life?
Biotechnology is one of the great steps it has taken in man in many areas of life as well as for the future, here some inventions created for the human good, some already known and others not yet so much.

Syringe : It consists of a plunger inserted in a tube that has a small opening at one of its ends where the contents of said tube are expelled.Invented by Alexander Wood.he disposable plastic syringe that we use today is an invention of the Spanish Manuel Jalon

Microscope : It is an instrument that allows you to observe objects that are too small to be observed with the naked eye.The most common type and the first one that was invented is the optical microscope.It is an optical instrument that contains two or more lenses that allow to obtain an enlarged image of the object and that works by refraction. Zacharias Janssen in 1590.

Anticonceptive pill : This contraceptive method only prevents unplanned pregnancies, but does not prevent the spread of sexually transmitted infections, so it is advisable to combine its use with condoms such as condoms if you have more than one partner.They were approved for contraceptive use in the 1960s in the United States.

3D printer : A 3D printer is a machine capable of replicating 3D designs, creating pieces or volumetric models from a design made by computer, downloaded from the internet or collected from a 3D scanner.
Currently, 3D printers are being used for functional prosthetics, dentures, in-the-ear hearing aids and inclusive custom-made bones, but despite what has been achieved scientists are looking for ways to create fully functional organs that save lives.

Why is biotechnology important?
This is how we realize that we are closer to the technology that we expected later than what is already But as long as it is for the benefit of humanity in the field of medicine and many aspects of daily life the sooner better biotechnology is a science What was created for the good of people to make life easier and in many cases to save it.

Friday, May 31, 2019

What are the advantages of biotechnology?

The data is at hand and there are scientific facts that support it.
Although food biotechnology continues to evolve like many sciences, it has been producing better products for human consumption for more than 40 years.
Here we present 10 advantages of genetically modified foods:
  • Improve nutrition and health
Thanks to biotechnology you can add nutrients and enrich foods.
  • Its consumption is safe for people
In 40 years of biotechnological research there is no documented evidence of damage to the human organism.
  • Agriculture based on biotechnology is sustainable
It has a lower environmental impact than traditional agriculture due to the reduction of carbon emissions through direct seeding.

  • Genetically modified crops help poorer farmers
Thanks to more resistant seeds they have better harvests and sell their product better.
They need less inputs to take care of their crops.
  • Most of the genetically modified foods that arrive at your table were grown with fewer pesticides
By creating more pest-resistant plants, the need to use pesticides to protect crops is reduced.
  • Increase crop yield
The productivity in GM crops is between 7% and 20% higher than in traditional agriculture, and 33% higher than organic crops.
  • Food biotechnology helps mitigate the hunger crisis in the world
Over the past 15 years, it has helped farmers produce 311.8 million more tons of food.

  • Food biotechnology has benefited the global economy
The applications of biotechnology in the agri-food chain represent the highest economic importance on a global scale.
Biotechnology research and development has generated thousands of patents on plants and processes based on them to universities and companies around the world, while linking productive food chains to biotechnology.
( Situation of biotechnology in the world , Pages 12 and 13, Center for Research in Applied Biotechnology-IPN).
  • Some GM foods help reduce food waste
With foods that resist more time in good condition, there are fewer fruits and vegetables that are thrown away before being consumed.
  • Cheaper production of food
Which translates into better prices for final consumers.

Tuesday, May 28, 2019

What is CRISPR/Cas9? What can it do?

CRISPR is actually a naturally-occurring, ancient defense mechanism found in a wide range of bacteria. As far as back the 1980s, scientists observed a strange pattern in some bacterial genomes. One DNA sequence would be repeated over and over again, with unique sequences in between the repeats. They called this odd configuration as Clustered Regulary Interspaced Short Palindromic Repeats (CRISPR). Originally in 1970s while studying several archae and eubacteria, the scientists came ac-cross such repeats which they called as Short Regularly Spaced Repeats (SRSR). Later in 2000s the clustered nature of these sequences was revealed and thus being named as CRISPR (read as crisper). The further studies revealed that these sequences play a major role to defend bacteria from any phage infection, i.e. in bacterial adaptive immunity.

As I have mentioned earlier, these are short stretches of DNA sequences in bacterial genomes, wherein the bacteria have already encountered any phage invasion in earlier time. These sequences are short repeats mostly 20-50 bp in size and are separated by a 'spacer sequence' which is an artifact of previous phage invasion, i.e. the spacer sequence is a part of phage DNA sequence thus end up protecting bacteria from any subsequent phage invasion.
Such a dyad sequence-structure of the CRISPR loci, leads to formation of hairpin loop like secondary structure although the entire sequence might not be completely palindromic. These repeats are separated by uniform length spacers. In most of the cases the spacer sequences are much identical to the phage DNA sequences. In certain cases the spacer sequence can be identical to prokaryotic DNA sequences making them self targetting.
The CRISPRs are just one part of this bacterial immune system. The other significant counterpart is the CRISPR-associated genes (Cas genes) these genes code for several nucleases. These Cas proteins owing to their nuclease activity can slice any Nucleic Acid sequence. But now the question comes is, what is so special about this system?

So coming to Cas9, Cas9 is widely used nuclease and famous among scientists (albeit notorious amongst the phages ;-) ) and was isolated first from Spy bacteria or full name Streptococcus pyogenes. Now that we know what is the native role of CRISPR/Cas9 system, lets just think for what wonders it may do.
Connecting the dots:
Cas9 is a nuclease which cuts/snips the DNA whereas the CRISPR is a set of sequences which guide the Cas9 as of where to exactly snip the DNA. So since DNA is quite a long stretch of nucleotides A, T, G, C the CRISPR has to guide the Cas9 to some specific 20bp sequence (Cas9 identifies a stretch of 20bp sequence). So all that we biologists do is we study the part of DNA sequence which we want to snip/effiencently engineer, and design a "CRISPR guide RNA" which has the 20bp sequence similar to the target sequence and a tracer RNA sequence for recruitment and snipping purpose os Cas9 protein. SO all one needs to do is design this CRISPR guide RNA sequence and order it cloned inside a suitable vector (usually a plasmid). Upon transfection in to the cells the CRISPR guide RNA and Cas9 shall do their work quite efficiently. Alternatively you can also design a corrected sequence of certain faulty gene (usually in oligo-nucleotide form)  and co-transfect it into suitable organism/cell lines harbouring the faulty gene of internest. This shall lead to removal of faulty part from the gene and insertion of the correct part.

Similarly this system can be also used to effectively generate mutant varieties of particular gene for biological experiments. The traditional processes fail to do so with efficiency and require mostly a lot of breeding and may even cost several mice their lives and is time consuming too. The CRISPR system can be used efficiently to mutate any gene of interest and that too with good reproducibilty. Moreover this system can be used to manipulate any organism genome including that of humans.
The only con behind this technique is the off-targetting, that is the Cas9 might also snip a 20bp region which matches the Guide RNA sequence but is not somewhere else in the genome. Various people have been trying to optimise this artifact of off-targets by several computation approaches as well as using different Cas variants of Cpf variants. I wont go there since it is entirely different question to address.

You can refer to this link which tells one of the succesful human treatments by the CRISPR/Cas9 system - A Cell Therapy Untested in Humans Saves a Baby With Cancer

Friday, May 24, 2019

What's the future of biotechnology?

In order to answer this, one need only look at the technologies that are presently treated as theoretically possible but difficult to implement.

Regenerative Medicine



A lot of research is moving this to fruition. Every few months, some stem cell derived organ has been grown, shown to work or implanted for the first time; lungsliverskidneystracheae are a few of a very long list. 

When this has fully matured, organ farms will be able to grow or even print any fully functional organ and have it ready for implantation in weeks. This will dramatically increase life expectancy and quality. Thousands of people dieevery year waiting for an organ donor. Even those who get the organ they need live a perilous, uncomfortable life on immunosuppressant drugs. Regenerative medicine will end this death and suffering.


Synthetic Biology



We have woken on this planet and found ourselves surrounded by intractably complex, ancient machines all buzzing away to fulfill some billion year old programming. What if we could unravel their nightmarishly unreadable code so to write new algorithms for them or dictate entirely new forms for them? What if we could even reverse engineer them in order to compile a whole new language to work with?

This is already being done in a variety of industries. We genetically engineer plants to carry vitamins or be pest resistant, so we don't need to use pesticide. Since the 1970s, the insulin we give diabetics has come from genetically modified yeast. What if we could engineer bacteria to scrub the air of our pollutants and turn them into fuel or plastics

When this is mature, we'll do more than just swapping pre-existant genes between organisms for neat combinatorial affects; we'll be working from scratch. If we come to solve the protein folding problem, we'll be able to design and mass produce novel enzymes not otherwise found in nature for any conceivable effect. We may see problems that cannot be easily solved with conventional biology and design whole new genetic languages with new base pairs and amino acids custom built to the problems of tomorrow.


Iterated Embryo Selection (IES)

Imagine if you could run a successful, regimented eugenics program for 300 years, selecting who breeds with whom and ignoring any ethical objections. It's an untenable effort, but this new technique would allow it to be done in months with few of the ethical qualms. The idea is genius.

Take stem cells from as many volunteers as you like and cause them to differentiate into as many sperm and egg as you will. Fertilize the eggs with the sperm to form zygotes. Sequence the DNA of the zygotes and identify which candidate zygotes possess as much of some trait that you want to select for -- intelligence, for example. 

In in vitro fertilization (IVF), this would be where you implanted the selected zygote(s) into a prospective mother -- not in IES. Instead, take stem cells from the best zygotes and stimulate those stem cells to differentiate into sperm and egg. Fertilize the eggs with the sperm and repeat the process to your satisfaction and then implant the final zygote at the end of the iterative process into a prospective mother.

This technique will let us perform evolution in vitro by skipping the 20 years that it naturally takes for generational turnover. The effects of this can be profound. If we could correctly identify the genetic corollaries of intelligence and selected for those, we might be able to achieve gains higher than 300 IQ points in a single generation.

This may be the single most impactful technique in biotech since the polymerase chain reaction.


Biological Computing


At its core, biological systems are information systems. They store information, transmit it, code, decode, scramble it. They behave according to a complex array of logic gates, so is it any surprise that we could conceivably 
manipulate biomolecules and even whole organisms into computers?

DNA has been engineered into a high density, super low error data storage device.  Living cells can be rigged into behaving like transistors, fulfilling algorithmic routines normally only seen in computer code (IF, AND, OR statements). We can do the same thing  using enzymes or even DNA itself. 

This approach to computing has drawbacks but also benefits. Chemical pathways tend to be slow compared to silicon computing, not producing results for minutes or hours. However, biological computers have the capacity to be massively parallel, which lends itself to certain categories of computing problems. Also, cells and enzymes have their own actuators; not only can they compute a result, they can then physically move things around based on that result. We eventually want molecular scale nanobots that can assemble things for us, monitor and maintain our health, but the hardware for these poses enormous engineering hurdles. Living cells provide premade hardware; we only need to give them the right software.



Tuesday, May 21, 2019

Why is biotechnology important to agriculture?


Biotechnology will save the hungry people in the Plants instance soon it will be possible ti grow corn in dry conditions without worrying about insect and pests as well as growing and maturing at an astounding rate making it possible to get more than one crop per season.
In addition you will not have to fertilize as the stocks will self fertilize the soil
Now, beforehand we start screaming franken food let me point out that if you're starving you could care less what you get in food. Hunger and starvation Will KILL YOU

Biotechnology play a major role in agriculture for improving the productivity in different ways as environment become unpredictable day by day. And agriculture land also decreasing due to population so here biotechnologist are working in different scientific research such as making different fertilizer, agri input , trying to develop new variety of seed , desease less plant which can able to grow in today's environment





Farmers Benefit from Agricultural Biotechnology Seeds. Decades of documented evidence demonstrates that agricultural biotechnology is a safe and beneficial technology that contributes to both environmental and economic sustainability. Farmers choose biotech crops because they increase yield and lower production costs. Biotechnology has helped improve food quality, quantity and processing. It also has applications in manufacturing, where simple cells and proteins can be manipulated to produce chemicals. But biotechnology is most important for its implications in health and medicine.